PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2065
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Dof
Protein Properties Length: 445aa    MW: 49774.8 Da    PI: 7.7258
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2065genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222.1e-38157216362
                    zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                               +  lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s+
  Tp57577_TGAC_v2_mRNA2065 157 QPVLKCPRCESINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRST 216
                               6679****************************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-26157210IPR003851Zinc finger, Dof-type
PfamPF027011.3E-32159214IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.571160214IPR003851Zinc finger, Dof-type
PROSITE patternPS013610162198IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MNVENLYLRL WKFAISMILM CIIIWMHSMC KERKLSDTTT SGISYLHHYK HDCLISVLDL  60
HLHGLNARFD EDNIKLLQCI SCLSPSSSIA EKIIENGDLS SHLSIPTTHP PFIPSFLHPQ  120
MQEIHSIGAG GTRFFGGGGA ADRRLRPNQN NNNNQTQPVL KCPRCESINT KFCYYNNYNL  180
SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KSKRSTKPKN SSSSSEISTL PMTPPENKSN  240
SHSSSESSSL TAAAVTETLS EQKPLNSNTK INNXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXQQHCLIT SSSNETLPFG FGNCNGNGNV NCLTDASSFQ WQNQKVMDQQ  360
NHHHHGDALK LLPENIGSGS LMDHSIDFSL LQSKTSNGGF GSLDWQGGAD QGLFDLPNTV  420
DQGYWNHTHW TDQDNDNSTL FHLP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508651.11e-100PREDICTED: dof zinc finger protein DOF5.4
TrEMBLA0A072UQU96e-86A0A072UQU9_MEDTR; Dof domain zinc finger protein
STRINGGLYMA17G08950.11e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59983050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.13e-31OBF binding protein 4